OCA Atlas for 4N7E

4N7E

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

2JQ, BMA, NAG, PGE

enzyme

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

The identification of AF38469: An orally bioavailable inhibitor of the VPS10P family sorting receptor Sortilin., Schroder TJ, Christensen S, Lindberg S, Langgard M, David L, Maltas PJ, Eskildsen J, Jacobsen J, Tagmose L, Simonsen KB, Biilmann Ronn LC, de Jong IE, Malik IJ, Karlsson JJ, Bundgaard C, Egebjerg J, Stavenhagen JB, Strandbygard D, Thirup S, Andersen JL, Uppalanchi S, Pervaram S, Kasturi SP, Eradi P, Sakumudi DR, Watson SP, Bioorg Med Chem Lett. 2014 Jan 1;24(1):177-80. doi: 10.1016/j.bmcl.2013.11.046., Epub 2013 Nov 27. PMID:24355129

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (227 Kb) [Save to disk]

Biological Unit Coordinates (4n7e.pdb1.gz) 221 Kb

LPC: Ligand-Protein Contacts for 4N7E

CSU: Contacts of Structural Units for 4N7E

Structure Factors (544 Kb)

Retrieve 4N7E in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4N7E from S2C, [Save to disk]

Re-refined 4n7e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4N7E in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4n7e] [4n7e_A]

SWISS-PROT database:

Domain found in 4N7E: [VPS10 ] by SMART

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