4O46 Viral Protein date Dec 18, 2013
title 14-3-3-Gamma In Complex With Influenza Ns1 C-Terminal Tail Phosphorylated At S228
authors S.Qin, Y.Liu, W.Tempel, C.H.Arrowsmith, C.Bountra, A.M.Edwards, J. Structural Genomics Consortium (Sgc)
compound source
Molecule: 14-3-3 Protein Gamma
Chain: A, B, C, D, E, F
Synonym: Protein Kinase C Inhibitor Protein 1, Kcip-1, 14-3 Gamma, N-Terminally Processed;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ywhag
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-V2r-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b

Molecule: Nonstructural Protein 1
Chain: G, H, I, J, K, L
Engineered: Yes

Synthetic: Yes
Organism_scientific: Influenza A Virus H3n2
Organism_taxid: 41857
Other_details: Synthetic Peptide

Molecule: Unidentified Polymer
Chain: M, N, O, V
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ywhag
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-V2r-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 41 21 2
R_factor 0.226 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.829 121.829 314.221 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand SEP, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • protein kinase C inhibitor a...
  • positive regulation of prote...

  • Primary referenceStructural basis for histone mimicry and hijacking of host proteins by influenza virus protein NS1., Qin S, Liu Y, Tempel W, Eram MS, Bian C, Liu K, Senisterra G, Crombet L, Vedadi M, Min J, Nat Commun. 2014 May 23;5:3952. doi: 10.1038/ncomms4952. PMID:24853335
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (464 Kb) [Save to disk]
  • Biological Unit Coordinates (4o46.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (4o46.pdb2.gz) 80 Kb
  • Biological Unit Coordinates (4o46.pdb3.gz) 79 Kb
  • Biological Unit Coordinates (4o46.pdb4.gz) 79 Kb
  • Biological Unit Coordinates (4o46.pdb5.gz) 89 Kb
  • Biological Unit Coordinates (4o46.pdb6.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 4O46
  • CSU: Contacts of Structural Units for 4O46
  • Structure Factors (6447 Kb)
  • Retrieve 4O46 in mmCIF format [Save to disk]
  • Re-refined 4o46 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4O46 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4O46
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4O46, from MSDmotif at EBI
  • Fold representative 4o46 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o46_L] [4o46_C] [4o46_J] [4o46_B] [4o46_N] [4o46_K] [4o46_E] [4o46_G] [4o46_D] [4o46_O] [4o46_A] [4o46_H] [4o46_F] [4o46] [4o46_I] [4o46_V] [4o46_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4O46: [14_3_3 ] by SMART
  • Other resources with information on 4O46
  • Community annotation for 4O46 at PDBWiki (http://pdbwiki.org)

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