4OBP Transferase Transferase Inhibitor date Jan 07, 2014
title Map4k4 In Complex With Inhibitor (Compound 29), 6-(2-Fluorop Yl)Pyrido[3,2-D]Pyrimidin-4-Amine
authors S.F.Harris, P.Wu
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase Ki
Chain: A, B
Fragment: Kinase Domain
Synonym: Hpkgck-Like Kinase Hgk, Mapkerk Kinase Kinase Ki Mek Kinase Kinase 4, Mekkk 4, Nck-Interacting Kinase;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hgk, Kiaa0687, Map4k4, Nik
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
symmetry Space Group: P 21 21 21
R_factor 0.204 R_Free 0.247
length a length b length c angle alpha angle beta angle gamma
80.302 88.688 91.218 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.27 Å
ligand 2QU, MES, MG enzyme Transferase E.C. BRENDA
A, B

Primary referenceDiscovery of Selective 4-Amino-pyridopyrimidine Inhibitors of MAP4K4 Using Fragment-Based Lead Identification and Optimization., Crawford TD, Ndubaku CO, Chen H, Boggs JW, Bravo BJ, Delatorre K, Giannetti AM, Gould SE, Harris SF, Magnuson SR, McNamara E, Murray LJ, Nonomiya J, Sambrone A, Schmidt S, Smyczek T, Stanley M, Vitorino P, Wang L, West K, Wu P, Ye W, J Med Chem. 2014 Apr 9. PMID:24673130
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (4obp.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (4obp.pdb2.gz) 53 Kb
  • Biological Unit Coordinates (4obp.pdb3.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 4OBP
  • CSU: Contacts of Structural Units for 4OBP
  • Structure Factors (597 Kb)
  • Retrieve 4OBP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OBP from S2C, [Save to disk]
  • Re-refined 4obp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OBP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OBP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4OBP, from MSDmotif at EBI
  • Fold representative 4obp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4obp_B] [4obp_A] [4obp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4OBP: [S_TKc ] by SMART
  • Other resources with information on 4OBP
  • Community annotation for 4OBP at PDBWiki (http://pdbwiki.org)

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