4P13 Oxidoreductase date Feb 14, 2014
title Medium Chain Acyl-Coa Dehydrogenase, K304e Mutant
authors K.P.Battaile, A.W.Mohsen, J.Vockley
compound source
Molecule: Medium-Chain Specific Acyl-Coa Dehydrogenase, Mitochondrial;
Chain: A, B, C, D
Synonym: Mcad
Ec: 1.3.8.7
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acadm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.145 R_Free 0.163
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.270 102.590 149.650 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.73 Å
ligand FAD enzyme Oxidoreductase E.C.1.3.8.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (516 Kb) [Save to disk]
  • Biological Unit Coordinates (4p13.pdb1.gz) 505 Kb
  • LPC: Ligand-Protein Contacts for 4P13
  • CSU: Contacts of Structural Units for 4P13
  • Structure Factors (2689 Kb)
  • Retrieve 4P13 in mmCIF format [Save to disk]
  • Re-refined 4p13 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4P13 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4P13
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4P13, from MSDmotif at EBI
  • Fold representative 4p13 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p13_B] [4p13_A] [4p13] [4p13_D] [4p13_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4P13
  • Community annotation for 4P13 at PDBWiki (http://pdbwiki.org)

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