4PJV Transferase Transferase Inhibitor date May 12, 2014
title Structure Of Parp2 Catalytic Domain Bound To Inhibitor Bmn 6
authors M.Aoyagi-Scharber, A.S.Gardberg, T.L.Edwards
compound source
Molecule: Poly [Adp-Ribose] Polymerase 2
Chain: A, B
Fragment: Parp2 Helical And Catalytic Domains (Unp Residues
Synonym: Hparp-2,Adp-Ribosyltransferase Diphtheria Toxin-Li Artd2,Nad(+) Adp-Ribosyltransferase 2,Adprt-2,Poly[Adp-Ribo Synthase 2,Padprt-2;
Ec: 2.4.2.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Parp2, Adprt2, Adprtl2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Neb T7 Express
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1
R_factor 0.214 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.860 57.740 69.290 77.28 79.99 63.88
method X-Ray Diffractionresolution 2.50 Å
ligand 2YQ, GOL enzyme Transferase E.C.2.4.2.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for the inhibition of poly(ADP-ribose) polymerases 1 and 2 by BMN 673, a potent inhibitor derived from dihydropyridophthalazinone., Aoyagi-Scharber M, Gardberg AS, Yip BK, Wang B, Shen Y, Fitzpatrick PA, Acta Crystallogr F Struct Biol Commun. 2014 Sep 1;70(Pt 9):1143-9. doi:, 10.1107/S2053230X14015088. Epub 2014 Aug 29. PMID:25195882
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (221 Kb) [Save to disk]
  • Biological Unit Coordinates (4pjv.pdb1.gz) 109 Kb
  • Biological Unit Coordinates (4pjv.pdb2.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 4PJV
  • CSU: Contacts of Structural Units for 4PJV
  • Structure Factors (439 Kb)
  • Retrieve 4PJV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PJV from S2C, [Save to disk]
  • Re-refined 4pjv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PJV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PJV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4PJV, from MSDmotif at EBI
  • Fold representative 4pjv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pjv] [4pjv_A] [4pjv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4PJV
  • Community annotation for 4PJV at PDBWiki (http://pdbwiki.org)

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