4PO6 Transferase date Feb 25, 2014
title Crystal Structure Of The Human Tyk2 Ferm And Sh2 Domains Wit Ifnar1 Intracellular Peptide
authors H.J.A.Wallweber, P.J.Lupardus
compound source
Molecule: Non-Receptor Tyrosine-Protein Kinase Tyk2
Chain: A
Fragment: Unp Residues 23-583
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tyk2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pac

Molecule: Interferon Alphabeta Receptor 1
Chain: B
Fragment: Unp Residues 475-507
Synonym: Ifn-R-1, Ifn-Alphabeta Receptor 1, Cytokine Recep II Member 1, Cytokine Receptor Family 2 Member 1, Crf2-1, T Interferon Receptor 1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifnar, Ifnar1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pac
symmetry Space Group: C 1 2 1
R_factor 0.199 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
186.768 52.422 70.163 90.00 108.09 90.00
method X-Ray Diffractionresolution 1.99 Å
ligand GOL enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (4po6.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 4PO6
  • CSU: Contacts of Structural Units for 4PO6
  • Structure Factors (2330 Kb)
  • Retrieve 4PO6 in mmCIF format [Save to disk]
  • Re-refined 4po6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PO6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PO6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4PO6, from MSDmotif at EBI
  • Fold representative 4po6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4po6_A] [4po6_B] [4po6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4PO6: [B41] [SH2 ] by SMART
  • Other resources with information on 4PO6
  • Community annotation for 4PO6 at PDBWiki (http://pdbwiki.org)

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