4PO7 Structure of the Sortilin:neurotensin complex at excess neurotensin concentration date
authors Quistgaard, E.M., Groftehauge, M.K., Thirup, S.S.
compound source
symmetry
R_factor
R_Free 0.2119
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.66
ligand BMA, NAG, PCA, PG4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRevisiting the structure of the Vps10 domain of human sortilin and its interaction with neurotensin., Quistgaard EM, Groftehauge MK, Madsen P, Pallesen LT, Christensen B, Sorensen ES, Nissen P, Petersen CM, Thirup SS, Protein Sci. 2014 Jul 1. doi: 10.1002/pro.2512. PMID:24985322
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]
  • Biological Unit Coordinates (4po7.pdb1.gz) 230 Kb
  • LPC: Ligand-Protein Contacts for 4PO7
  • CSU: Contacts of Structural Units for 4PO7
  • Structure Factors (590 Kb)
  • Retrieve 4PO7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PO7 from S2C, [Save to disk]
  • Re-refined 4po7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PO7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PO7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PO7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4po7_A] [4po7] [4po7_P] [4po7_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PO7: [VPS10 ] by SMART
  • Other resources with information on 4PO7
  • Community annotation for 4PO7 at PDBWiki (http://pdbwiki.org)

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