4PO7 Protein Binding date Feb 25, 2014
title Structure Of The Sortilin:Neurotensin Complex At Excess Neur Concentration
authors E.M.Quistgaard, M.K.Groftehauge, S.S.Thirup
compound source
Molecule: Sortilin
Chain: A
Fragment: Unp Residues 78-756
Synonym: 100 Kda Nt Receptor, Glycoprotein 95, Gp95, Neurot Receptor 3, Nt3, Ntr3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sort1
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_cell_line: Cho-K1

Molecule: Neurotensinneuromedin N
Chain: N, P
Fragment: Unp Residues 151-163
Synonym: Large Neuromedin N, Nmn-125, Neuromedin N, Nn, Nmn Neurotensin, Nt, Tail Peptide;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.166 R_Free 0.212
length a length b length c angle alpha angle beta angle gamma
162.010 78.650 110.980 90.00 126.62 90.00
method X-Ray Diffractionresolution 2.66 Å
ligand BMA, NAG, PCA, PG4 enzyme

Primary referenceRevisiting the structure of the Vps10 domain of human sortilin and its interaction with neurotensin., Quistgaard EM, Groftehauge MK, Madsen P, Pallesen LT, Christensen B, Sorensen ES, Nissen P, Petersen CM, Thirup SS, Protein Sci. 2014 Jul 1. doi: 10.1002/pro.2512. PMID:24985322
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]
  • Biological Unit Coordinates (4po7.pdb1.gz) 230 Kb
  • LPC: Ligand-Protein Contacts for 4PO7
  • CSU: Contacts of Structural Units for 4PO7
  • Structure Factors (590 Kb)
  • Retrieve 4PO7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PO7 from S2C, [Save to disk]
  • Re-refined 4po7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PO7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PO7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4PO7, from MSDmotif at EBI
  • Fold representative 4po7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4po7_A] [4po7] [4po7_P] [4po7_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PO7: [VPS10 ] by SMART
  • Other resources with information on 4PO7
  • Community annotation for 4PO7 at PDBWiki (http://pdbwiki.org)

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