OCA Atlas for 4QCI

4QCI

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
D, C

Primary reference

Characterization of Binding Mode of Action of a Blocking Anti-Platelet-Derived Growth Factor (PDGF)-B Monoclonal Antibody, MOR8457, Reveals Conformational Flexibility and Avidity Needed for PDGF-BB To Bind PDGF Receptor-beta, Kuai J, Mosyak L, Brooks J, Cain M, Carven GJ, Ogawa S, Ishino T, Tam M, Lavallie ER, Yang Z, Ponsel D, Rauchenberger R, Arch R, Pullen N, Biochemistry. 2015 Mar 6. PMID:25707433

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]

Biological Unit Coordinates (4qci.pdb1.gz) 85 Kb

Biological Unit Coordinates (4qci.pdb2.gz) 82 Kb

CSU: Contacts of Structural Units for 4QCI

Structure Factors (2693 Kb)

Retrieve 4QCI in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4QCI from S2C, [Save to disk]

Re-refined 4qci structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4QCI in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4qci] [4qci_A] [4qci_B] [4qci_C] [4qci_D] [4qci_H] [4qci_L]

SWISS-PROT database:

Domains found in 4QCI: [IG_like] [IGv] [PDGF ] by SMART

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