4QPP Transferase Transferase Inhibitor date Jun 24, 2014
title The Crystal Structure Of Human Hmt1 Hnrnp Methyltransferase- Protein 6 In Complex With Compound Ds-421 (2-{4-[3-Chloro-2 Methoxyphenyl)-1h-Indol-5-Yl]Piperidin-1-Yl}-N-Methylethana
authors A.Dong, H.Zeng, D.Smil, J.R.Walker, H.He, M.Eram, C.Bountra, C.H.Ar A.M.Edwards, M.Vedadi, P.J.Brown, H.Wu, Structural Genomics Con (Sgc)
compound source
Molecule: Protein Arginine N-Methyltransferase 6
Chain: A, B, C
Synonym: Heterogeneous Nuclear Ribonucleoprotein Methyltran Like Protein 6, Histone-Arginine N-Methyltransferase Prmt6;
Ec: 2.1.1.-, 2.1.1.125
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hrmt1l6, Prmt6
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfboh-Mhl

Molecule: Poly-Unk
Chain: D, E, F
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
symmetry Space Group: P 42 2 2
R_factor 0.191 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
133.884 133.884 133.419 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.52 Å
ligand 36S, SAH enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • histone methyltransferase ac...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (4qpp.pdb1.gz) 112 Kb
  • Biological Unit Coordinates (4qpp.pdb2.gz) 112 Kb
  • Biological Unit Coordinates (4qpp.pdb3.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 4QPP
  • CSU: Contacts of Structural Units for 4QPP
  • Structure Factors (2086 Kb)
  • Retrieve 4QPP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QPP from S2C, [Save to disk]
  • Re-refined 4qpp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QPP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QPP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4QPP, from MSDmotif at EBI
  • Fold representative 4qpp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qpp_B] [4qpp_E] [4qpp_C] [4qpp_D] [4qpp_F] [4qpp_A] [4qpp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4QPP
  • Community annotation for 4QPP at PDBWiki (http://pdbwiki.org)

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