4QQK Transferase date Jun 27, 2014
title Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevi Gms
authors A.Dong, H.Zeng, H.He, A.Wernimont, C.Bountra, C.H.Arrowsmith, A.M. P.J.Brown, J.Min, M.Luo, H.Wu, Structural Genomics Consortium (
compound source
Molecule: Protein Arginine N-Methyltransferase 6
Chain: A
Synonym: Heterogeneous Nuclear Ribonucleoprotein Methyltran Like Protein 6, Histone-Arginine N-Methyltransferase Prmt6;
Ec: 2.1.1.-, 2.1.1.125
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prmt6, Hrmt1l6
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfboh-Mhl
symmetry Space Group: I 41
R_factor 0.176 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.211 95.211 108.359 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.88 Å
ligand 37H, GOL, UNX enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • histone methyltransferase ac...


  • Primary referenceStructural basis of arginine asymmetrical dimethylation by PRMT6., Wu H, Zheng W, Eram MS, Vhuiyan M, Dong A, Zeng H, He H, Brown P, Frankel A, Vedadi M, Luo M, Min J, Biochem J. 2016 Oct 1;473(19):3049-63. doi: 10.1042/BCJ20160537. Epub 2016 Aug 1. PMID:27480107
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (4qqk.pdb1.gz) 113 Kb
  • LPC: Ligand-Protein Contacts for 4QQK
  • CSU: Contacts of Structural Units for 4QQK
  • Structure Factors (2068 Kb)
  • Retrieve 4QQK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QQK from S2C, [Save to disk]
  • Re-refined 4qqk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QQK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QQK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4QQK, from MSDmotif at EBI
  • Fold representative 4qqk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qqk_A] [4qqk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4QQK
  • Community annotation for 4QQK at PDBWiki (http://pdbwiki.org)

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