4R3R Transferase date Aug 17, 2014
title Crystal Structures Of Egfr In Complex With Mig6
authors E.Park, N.Kim, Z.Yi, A.Cho, K.Kim, S.B.Ficarro, A.Park, W.Y.Park, B. M.Meyerson, R.Beroukim, J.A.Marto, J.Cho, M.J.Eck
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A
Fragment: Kinase Domain (Unp Residues 696-1018)
Synonym: Proto-Oncogene C-Erbb-1, Receptor Tyrosine-Protein Erbb-1;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egfr, Erbb, Erbb1, Erbb1(Egfr), Her1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Ptriex

Molecule: Peptide From Erbb Receptor Feedback Inhibitor 1'
Chain: B
Fragment: Segment 2 (Unp Residues 392-398)
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: I 2 3
R_factor 0.196 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
144.689 144.689 144.689 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.25 Å
ligand PTR enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and mechanism of activity-based inhibition of the EGF receptor by Mig6., Park E, Kim N, Ficarro SB, Zhang Y, Lee BI, Cho A, Kim K, Park AK, Park WY, Murray B, Meyerson M, Beroukhim R, Marto JA, Cho J, Eck MJ, Nat Struct Mol Biol. 2015 Aug 17. doi: 10.1038/nsmb.3074. PMID:26280531
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (4r3r.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 4R3R
  • CSU: Contacts of Structural Units for 4R3R
  • Structure Factors (110 Kb)
  • Retrieve 4R3R in mmCIF format [Save to disk]
  • Re-refined 4r3r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4R3R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4R3R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4r3r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4r3r_B] [4r3r] [4r3r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4R3R: [TyrKc ] by SMART
  • Other resources with information on 4R3R
  • Community annotation for 4R3R at PDBWiki (http://pdbwiki.org)

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