OCA Atlas for 4R67

4R67

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

3BV

enzyme

Gene
Ontology

Chain	Function	Process	Component
0m, Y, K
A, O, c, q		positive regulation of NF-ka...
F, v, h, T
N, 2, b, p
X, l, J, z
Z, L, n, 3
a, M, o, 1
g, E, u, S
k, j, H, I, W, x, y, V
r, d, P, B
s, C, Q, e
t, D, f, R
w, U, G, i

Primary reference

Crystal Structure of the Human 20S Proteasome in Complex with Carfilzomib., Harshbarger W, Miller C, Diedrich C, Sacchettini J, Structure. 2015 Feb 3;23(2):418-24. doi: 10.1016/j.str.2014.11.017. Epub 2015 Jan, 15. PMID:25599644

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1934 Kb) [Save to disk]

Biological Unit Coordinates (4r67.pdb1.gz) 972 Kb

Biological Unit Coordinates (4r67.pdb2.gz) 971 Kb

LPC: Ligand-Protein Contacts for 4R67

CSU: Contacts of Structural Units for 4R67

Structure Factors (5277 Kb)

Retrieve 4R67 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4R67 from S2C, [Save to disk]

Re-refined 4r67 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4R67 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4r67] [4r67_0] [4r67_1] [4r67_2] [4r67_3] [4r67_A] [4r67_B] [4r67_C] [4r67_D] [4r67_E] [4r67_F] [4r67_G] [4r67_H] [4r67_I] [4r67_J] [4r67_K] [4r67_L] [4r67_M] [4r67_N] [4r67_O] [4r67_P] [4r67_Q] [4r67_R] [4r67_S] [4r67_T] [4r67_U] [4r67_V] [4r67_W] [4r67_X] [4r67_Y] [4r67_Z] [4r67_a] [4r67_b] [4r67_c] [4r67_d] [4r67_e] [4r67_f] [4r67_g] [4r67_h] [4r67_i] [4r67_j] [4r67_k] [4r67_l] [4r67_m] [4r67_n] [4r67_o] [4r67_p] [4r67_q] [4r67_r] [4r67_s] [4r67_t] [4r67_u] [4r67_v] [4r67_w] [4r67_x] [4r67_y] [4r67_z]

SWISS-PROT database:

Domain found in 4R67: [Proteasome_A_N ] by SMART

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