OCA Atlas for 4RDO

4RDO

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, C, E, B, F, A

Primary reference

Structure of the YTH domain of human YTHDF2 in complex with an m(6)A mononucleotide reveals an aromatic cage for m(6)A recognition., Li F, Zhao D, Wu J, Shi Y, Cell Res. 2014 Dec;24(12):1490-2. doi: 10.1038/cr.2014.153. Epub 2014 Nov 21. PMID:25412658

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]

Biological Unit Coordinates (4rdo.pdb1.gz) 28 Kb

Biological Unit Coordinates (4rdo.pdb2.gz) 28 Kb

Biological Unit Coordinates (4rdo.pdb3.gz) 28 Kb

Biological Unit Coordinates (4rdo.pdb4.gz) 27 Kb

Biological Unit Coordinates (4rdo.pdb5.gz) 26 Kb

Biological Unit Coordinates (4rdo.pdb6.gz) 26 Kb

LPC: Ligand-Protein Contacts for 4RDO

CSU: Contacts of Structural Units for 4RDO

Structure Factors (1280 Kb)

Retrieve 4RDO in mmCIF format [Save to disk]

Re-refined 4rdo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4RDO in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4rdo] [4rdo_A] [4rdo_B] [4rdo_C] [4rdo_D] [4rdo_E] [4rdo_F]

SWISS-PROT database:

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