4RG9 Protein Binding date Sep 29, 2014
title Crystal Structure Of Apc3-Apc16 Complex (Selenomethionine De
authors M.Yamaguchi, S.Yu, D.J.Miller, B.A.Schulman
compound source
Molecule: Cell Division Cycle Protein 27 Homolog
Chain: A, B
Fragment: Unp Residues 1-180, 447-824
Synonym: Anaphase-Promoting Complex Subunit 3, Apc3, Cdc27 Cdc27hs, H-Nuc;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdc27, Anapc3, D0s1430e, D17s978e
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Anaphase-Promoting Complex Subunit 16
Chain: S
Synonym: Apc16, Cyclosome Subunit 16
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anapc16, C10orf104
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 43
R_factor 0.210 R_Free 0.248
length a length b length c angle alpha angle beta angle gamma
116.019 116.019 184.352 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.25 Å
ligand MSE enzyme

Primary referenceStructure of an APC3-APC16 complex: Insights into assembly of the Anaphase Promoting Complex/Cyclosome., Yamaguchi M, Yu S, Qiao R, Weissmann F, Miller DJ, VanderLinden R, Brown NG, Frye JJ, Peters JM, Schulman BA, J Mol Biol. 2014 Dec 6. pii: S0022-2836(14)00616-0. doi:, 10.1016/j.jmb.2014.11.020. PMID:25490258
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (4rg9.pdb1.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 4RG9
  • CSU: Contacts of Structural Units for 4RG9
  • Structure Factors (725 Kb)
  • Retrieve 4RG9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RG9 from S2C, [Save to disk]
  • Re-refined 4rg9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RG9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RG9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4RG9, from MSDmotif at EBI
  • Fold representative 4rg9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rg9_B] [4rg9_S] [4rg9_A] [4rg9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4RG9: [TPR ] by SMART
  • Other resources with information on 4RG9
  • Community annotation for 4RG9 at PDBWiki (http://pdbwiki.org)

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