4ROC Transcription date Oct 28, 2014
title Human Tfiib-Related Factor 2 (Brf2) And Tbp Bound To U6#2 Pr
authors A.Vannini, J.Gouge, K.Satia, N.Guthertz
compound source
Molecule: Transcription Factor Iiib 50 Kda Subunit
Chain: A
Synonym: Tfiiib50, Htfiiib50, B-Related Factor 2, Brf-2, Hb
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brf2, Brfu, Pro1470
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tata-Box-Binding Protein
Chain: B
Synonym: Tata Sequence-Binding Protein, Tata-Binding Factor Factor, Transcription Initiation Factor Tfiid Tbp Subunit;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tbp, Gtf2d1, Tf2d, Tfiid
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Template Strand
Chain: N
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Oligonucleotide

Molecule: Non-Template Strand
Chain: T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Oligonucleotide
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.276 89.911 102.462 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceRedox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf2., Gouge J, Satia K, Guthertz N, Widya M, Thompson AJ, Cousin P, Dergai O, Hernandez N, Vannini A, Cell. 2015 Dec 3;163(6):1375-87. doi: 10.1016/j.cell.2015.11.005. PMID:26638071
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk]
  • Biological Unit Coordinates (4roc.pdb1.gz) 212 Kb
  • LPC: Ligand-Protein Contacts for 4ROC
  • CSU: Contacts of Structural Units for 4ROC
  • Structure Factors (1403 Kb)
  • Retrieve 4ROC in mmCIF format [Save to disk]
  • Re-refined 4roc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ROC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ROC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4roc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4roc_N] [4roc_A] [4roc_T] [4roc_B] [4roc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ROC: [CYCLIN ] by SMART
  • Other resources with information on 4ROC
  • Community annotation for 4ROC at PDBWiki (http://pdbwiki.org)

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