4RVT Transferase Transferase Inhibitor date Nov 27, 2014
title Map4k4 In Complex With A Pyridin-2(1h)-One Derivative
authors A.Richters, C.Becker, S.Kleine, D.Rauh
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase Ki
Chain: A, B
Fragment: Kinase Domain (Unp Residues 1-325)
Synonym: Hpkgck-Like Kinase Hgk, Mapkerk Kinase Kinase Ki Mek Kinase Kinase 4, Mekkk 4, Nck-Interacting Kinase;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hgk, Kiaa0687, Map4k4, Nik
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Plasma
Expression_system_plasmid: Piexbac3
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.990 90.250 90.970 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 3XM, MES enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNeuritogenic Militarinone-Inspired 4-Hydroxypyridones Target the Stress Pathway Kinase MAP4K4., Schroder P, Forster T, Kleine S, Becker C, Richters A, Ziegler S, Rauh D, Kumar K, Waldmann H, Angew Chem Int Ed Engl. 2015 Apr 23. doi: 10.1002/anie.201501515. PMID:25908259
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (4rvt.pdb1.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 4RVT
  • CSU: Contacts of Structural Units for 4RVT
  • Structure Factors (240 Kb)
  • Retrieve 4RVT in mmCIF format [Save to disk]
  • Re-refined 4rvt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RVT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RVT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4RVT, from MSDmotif at EBI
  • Fold representative 4rvt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rvt_A] [4rvt] [4rvt_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4RVT: [S_TKc ] by SMART
  • Other resources with information on 4RVT
  • Community annotation for 4RVT at PDBWiki (http://pdbwiki.org)

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