4RVT MAP4K4 in complex with a pyridin-2(1H)-one derivative date
authors Richters, A., Becker, C., Kleine, S., Rauh, D.
compound source
symmetry
R_factor
R_Free 0.2776
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand 3XM, MES enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNeuritogenic Militarinone-Inspired 4-Hydroxypyridones Target the Stress Pathway Kinase MAP4K4., Schroder P, Forster T, Kleine S, Becker C, Richters A, Ziegler S, Rauh D, Kumar K, Waldmann H, Angew Chem Int Ed Engl. 2015 Apr 23. doi: 10.1002/anie.201501515. PMID:25908259
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (4rvt.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 4RVT
  • CSU: Contacts of Structural Units for 4RVT
  • Structure Factors (240 Kb)
  • Retrieve 4RVT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RVT from S2C, [Save to disk]
  • Re-refined 4rvt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4RVT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4RVT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RVT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rvt_A] [4rvt] [4rvt_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4RVT: [S_TKc ] by SMART
  • Other resources with information on 4RVT
  • Community annotation for 4RVT at PDBWiki (http://pdbwiki.org)

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