4S0V Signaling Protein date Jan 06, 2015
title Crystal Structure Of The Human Ox2 Orexin Receptor Bound To Insomnia Drug Suvorexant
authors J.Yin, P.Kolb, J.C.Mobarec, D.M.Rosenbaum
compound source
Molecule: Human Orexin Receptor Type 2 Fusion Protein To P. Glycogen Synthase;
Chain: A
Fragment: Unp O43614 Residues 3-254, 294-388, And Unp Q9v2j 218-413;
Synonym: Ox-2-R, Ox2-R, Ox2r, Hypocretin Receptor Type 2, G Synthase;
Engineered: Yes
Organism_scientific: Homo Sapiens, Pyrococcus Abyssi Ge5
Organism_common: Human
Organism_taxid: 9606, 272844
Gene: Hcrtr2, Pab2292, Pyrab00770
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Fastbac Baculovirus
Expression_system_plasmid: Pfastbac1
symmetry Space Group: C 1 2 1
R_factor 0.197 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.358 75.819 96.335 90.00 111.71 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand OLA, SUV enzyme
note 4S0V supersedes 4RNB
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the human OX orexin receptor bound to the insomnia drug suvorexant., Yin J, Mobarec JC, Kolb P, Rosenbaum DM, Nature. 2014 Dec 22. doi: 10.1038/nature14035. PMID:25533960
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (4s0v.pdb1.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 4S0V
  • CSU: Contacts of Structural Units for 4S0V
  • Structure Factors (329 Kb)
  • Retrieve 4S0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4S0V from S2C, [Save to disk]
  • Re-refined 4s0v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4S0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4S0V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4S0V, from MSDmotif at EBI
  • Fold representative 4s0v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4s0v_A] [4s0v]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4S0V
  • Community annotation for 4S0V at PDBWiki (http://pdbwiki.org)

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