4S15 Transcription date Jan 08, 2015
title Crystal Structure Of The Orphan Nuclear Receptor Roralpha Li Binding Domain In Complex With 4alpha-Caboxyl, 4beta-Methyl Zymosterol (4acd8)
authors P.Huang, F.R.Santori, D.R.Littman, F.Rastinejad
compound source
Molecule: Nuclear Receptor Ror-Alpha
Chain: A, B
Fragment: Ligand-Binding Domain
Synonym: Nuclear Receptor Rzr-Alpha, Nuclear Receptor Subfa Group F Member 1, Rar-Related Orphan Receptor A, Retinoid-R Orphan Receptor-Alpha;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr1f1, Rora, Rzra
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet46

Molecule: Nuclear Receptor-Interacting Protein 1
Chain: C, D
Fragment: Lxxll Binding Motif
Synonym: Nuclear Factor Rip140, Receptor-Interacting Protei
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.194 80.305 113.104 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 4D8, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIdentification of Natural RORgamma Ligands that Regulate the Development of Lymphoid Cells., Santori FR, Huang P, van de Pavert SA, Douglass EF Jr, Leaver DJ, Haubrich BA, Keber R, Lorbek G, Konijn T, Rosales BN, Rozman D, Horvat S, Rahier A, Mebius RE, Rastinejad F, Nes WD, Littman DR, Cell Metab. 2015 Feb 3;21(2):286-97. doi: 10.1016/j.cmet.2015.01.004. PMID:25651181
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (192 Kb) [Save to disk]
  • Biological Unit Coordinates (4s15.pdb1.gz) 92 Kb
  • Biological Unit Coordinates (4s15.pdb2.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 4S15
  • CSU: Contacts of Structural Units for 4S15
  • Structure Factors (906 Kb)
  • Retrieve 4S15 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4S15 from S2C, [Save to disk]
  • Re-refined 4s15 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4S15 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4S15
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4S15, from MSDmotif at EBI
  • Fold representative 4s15 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4s15_C] [4s15_A] [4s15_D] [4s15_B] [4s15]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4S15: [HOLI ] by SMART
  • Other resources with information on 4S15
  • Community annotation for 4S15 at PDBWiki (http://pdbwiki.org)

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