4U3Y Transferase date Jul 23, 2014
title Apo Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4
authors S.F.Harris, P.Wu, M.Coons
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase Ki
Chain: A, B
Fragment: Kinase Domain (Unp Residues 2-328)
Synonym: Hpkgck-Like Kinase Hgk,Mapkerk Kinase Kinase Kin Mekkk 4,Nck-Interacting Kinase;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map4k4, Hgk, Kiaa0687, Nik
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
symmetry Space Group: P 21 21 21
R_factor 0.183 R_Free 0.207
length a length b length c angle alpha angle beta angle gamma
80.407 80.839 92.953 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand DMS enzyme Transferase E.C. BRENDA
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (4u3y.pdb1.gz) 113 Kb
  • Biological Unit Coordinates (4u3y.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (4u3y.pdb3.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 4U3Y
  • CSU: Contacts of Structural Units for 4U3Y
  • Structure Factors (2658 Kb)
  • Retrieve 4U3Y in mmCIF format [Save to disk]
  • Re-refined 4u3y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4U3Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4U3Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4u3y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u3y_B] [4u3y] [4u3y_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4U3Y: [S_TKc ] by SMART
  • Other resources with information on 4U3Y
  • Community annotation for 4U3Y at PDBWiki (http://pdbwiki.org)

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