4UI9 Atomic structure of the human Anaphase-Promoting Complex date
authors Chang, L., Zhang, Z., Yang, J., McLaughlin, S.H., Barford, D.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.60
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C, P


D


E


F, H


I


K, J


L


M


N


O


R


S


W, G


Y, X


Primary referenceAtomic structure of the APC/C and its mechanism of protein ubiquitination., Chang L, Zhang Z, Yang J, McLaughlin SH, Barford D, Nature. 2015 Jun 25;522(7557):450-4. doi: 10.1038/nature14471. Epub 2015 Jun 15. PMID:26083744
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1375 Kb) [Save to disk]
  • Biological Unit Coordinates (4ui9.pdb1.gz) 1352 Kb
  • LPC: Ligand-Protein Contacts for 4UI9
  • CSU: Contacts of Structural Units for 4UI9
  • Retrieve 4UI9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UI9 from S2C, [Save to disk]
    • View 4UI9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4UI9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UI9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ui9_O] [4ui9_C] [4ui9_G] [4ui9_A] [4ui9] [4ui9_W] [4ui9_E] [4ui9_U] [4ui9_N] [4ui9_P] [4ui9_D] [4ui9_M] [4ui9_R] [4ui9_K] [4ui9_Y] [4ui9_B] [4ui9_X] [4ui9_S] [4ui9_T] [4ui9_J] [4ui9_H] [4ui9_I] [4ui9_L] [4ui9_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4UI9: [APC10] [APC2] [CULLIN] [IBR] [RING] [TPR] [WD40 ] by SMART
    • Other resources with information on 4UI9
  • Community annotation for 4UI9 at PDBWiki (http://pdbwiki.org)

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