4UJ3 Transport Protein date Apr 08, 2015
title Crystal Structure Of Human Rab11-Rabin8-Fip3
authors M.Vetter, E.Lorentzen
compound source
Molecule: Ras-Related Protein Rab-11a
Chain: A, D, G, J, M, P, S, V
Fragment: Gtpase Domain
Synonym: Rab-11, Yl8, Rab11a
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: Rab-3a-Interacting Protein
Chain: B, E, H, K, N, Q, T, W
Fragment: C-Terminal Domain
Synonym: Rab3a-Interacting Protein, Rabin-3, Ssx2-Interacti Protein, Rabin8;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: Rab11 Family-Interacting Protein 3
Chain: C, F, I, L, O, R, U, X
Fragment: C-Terminal Domain
Synonym: Fip3-Rab11, Rab11-Fip3, Arfophilin-1, Ef Hands-Con Rab-Interacting Protein, Eferin, Mu-Mb-17.148, Fip3;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 1 21 1
R_factor 0.1979 R_Free 0.2504
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.498 165.374 218.687 90.00 95.93 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand GNP, MG, PG4, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, C, L, O, X, R, I, U


S, V, M, A, J, P, D, G


T, N, K, E, Q, W, B, H


Primary referenceStructure of Rab11-FIP3-Rabin8 reveals simultaneous binding of FIP3 and Rabin8 effectors to Rab11., Vetter M, Stehle R, Basquin C, Lorentzen E, Nat Struct Mol Biol. 2015 Aug 10. doi: 10.1038/nsmb.3065. PMID:26258637
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (491 Kb) [Save to disk]
  • Biological Unit Coordinates (4uj3.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (4uj3.pdb2.gz) 66 Kb
  • Biological Unit Coordinates (4uj3.pdb3.gz) 67 Kb
  • Biological Unit Coordinates (4uj3.pdb4.gz) 65 Kb
  • Biological Unit Coordinates (4uj3.pdb5.gz) 66 Kb
  • Biological Unit Coordinates (4uj3.pdb6.gz) 65 Kb
  • Biological Unit Coordinates (4uj3.pdb7.gz) 66 Kb
  • Biological Unit Coordinates (4uj3.pdb8.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 4UJ3
  • CSU: Contacts of Structural Units for 4UJ3
  • Structure Factors (1536 Kb)
  • Retrieve 4UJ3 in mmCIF format [Save to disk]
  • Re-refined 4uj3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UJ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UJ3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4uj3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uj3_L] [4uj3_D] [4uj3_O] [4uj3_E] [4uj3_R] [4uj3_P] [4uj3_Q] [4uj3_M] [4uj3_B] [4uj3_T] [4uj3_A] [4uj3] [4uj3_F] [4uj3_J] [4uj3_G] [4uj3_I] [4uj3_V] [4uj3_K] [4uj3_X] [4uj3_N] [4uj3_S] [4uj3_H] [4uj3_U] [4uj3_C] [4uj3_W]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4UJ3: [RAB ] by SMART
  • Other resources with information on 4UJ3
  • Community annotation for 4UJ3 at PDBWiki (http://pdbwiki.org)

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