4UM8 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BMA, CA, CAC, CL, MAN, MG, NAG, NI, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, A


D, B


Primary referenceStructural determinants of integrin beta-subunit specificity for latent TGF-beta, Dong X, Hudson NE, Lu C, Springer TA, Nat Struct Mol Biol. 2014 Nov 10. doi: 10.1038/nsmb.2905. PMID:25383667
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (614 Kb) [Save to disk]
  • Biological Unit Coordinates (4um8.pdb1.gz) 301 Kb
  • Biological Unit Coordinates (4um8.pdb2.gz) 303 Kb
  • LPC: Ligand-Protein Contacts for 4UM8
  • CSU: Contacts of Structural Units for 4UM8
  • Structure Factors (619 Kb)
  • Retrieve 4UM8 in mmCIF format [Save to disk]
  • Re-refined 4um8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4UM8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4um8] [4um8_A] [4um8_B] [4um8_C] [4um8_D]
  • SWISS-PROT database:
  • Domains found in 4UM8: [EGF_like] [INB] [Int_alpha] [Integrin_B_tail] [Integrin_b_cyt] [PSI] [VWA ] by SMART

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