4UYJ Signaling Protein date Sep 01, 2014
title Crystal Structure Of A Signal Recognition Particle Alu Domain In The Elongation Arrest Conformation
authors L.Bousset, C.Mary, M.A.Brooks, A.Scherrer, K.Strub, S.Cusack
compound source
Molecule: Signal Recognition Particle 9 Kda Protein
Chain: A, C
Fragment: Residues 1-85
Synonym: Srp9
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet9a
Expression_system_plasmid: Peh9

Molecule: Signal Recognition Particle 14 Kda Protein
Chain: B, D
Fragment: Residues 1-107
Synonym: Srp14,18 Kda Alu Rna-Binding Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet9a
Expression_system_plasmid: Peh14deltar

Molecule: Srp Rna
Chain: R, S
Fragment: Alu Domain, Residues 1-89 And Residues 289-314

Synthetic: Yes
Organism_scientific: Pyrococcus Horikoshii Ot3
Organism_taxid: 70601
symmetry Space Group: P 21 21 21
R_factor 0.19229 R_Free 0.23643
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.950 108.600 128.160 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.35 Å
ligand CCC, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceCrystal structure of a signal recognition particle Alu domain in the elongation arrest conformation., Bousset L, Mary C, Brooks MA, Scherrer A, Strub K, Cusack S, RNA. 2014 Oct 21. PMID:25336584
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (322 Kb) [Save to disk]
  • Biological Unit Coordinates (4uyj.pdb1.gz) 158 Kb
  • Biological Unit Coordinates (4uyj.pdb2.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 4UYJ
  • CSU: Contacts of Structural Units for 4UYJ
  • Structure Factors (403 Kb)
  • Retrieve 4UYJ in mmCIF format [Save to disk]
  • Re-refined 4uyj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UYJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UYJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4UYJ, from MSDmotif at EBI
  • Fold representative 4uyj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uyj_B] [4uyj_A] [4uyj_D] [4uyj_S] [4uyj_C] [4uyj] [4uyj_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4UYJ
  • Community annotation for 4UYJ at PDBWiki (http://pdbwiki.org)

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