4WCI Signaling Protein date Sep 04, 2014
title Crystal Structure Of The 1st Sh3 Domain From Human Cd2ap (Cm Complex With A Proline-Rich Peptide (Aa 378-393) From Human
authors E.Rouka, P.C.Simister, M.Janning, K.H.Kirsch, T.Krojer, S.Knapp, F Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, S.M.Feller, Struc Genomics Consortium (Sgc)
compound source
Molecule: Cd2-Associated Protein
Chain: A, C, E
Fragment: Unp Residues 1-60
Synonym: Adapter Protein Cms,Cas Ligand With Multiple Sh3 D
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd2ap
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1

Molecule: Ras And Rab Interactor 3
Chain: B, D, F
Synonym: Ras Interactioninterference Protein 3
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.192 R_Free 0.219
length a length b length c angle alpha angle beta angle gamma
95.526 55.362 64.557 90.00 131.72 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand SO4 enzyme
Primary referenceDifferential Recognition Preferences of the Three Src Homology 3 (SH3) Domains from the Adaptor CD2-associated Protein (CD2AP) and Direct Association with Ras and Rab Interactor 3 (RIN3)., Rouka E, Simister PC, Janning M, Kumbrink J, Konstantinou T, Muniz JR, Joshi D, O'Reilly N, Volkmer R, Ritter B, Knapp S, von Delft F, Kirsch KH, Feller SM, J Biol Chem. 2015 Oct 16;290(42):25275-92. doi: 10.1074/jbc.M115.637207. Epub, 2015 Aug 20. PMID:26296892
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (4wci.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (4wci.pdb2.gz) 28 Kb
  • Biological Unit Coordinates (4wci.pdb3.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 4WCI
  • CSU: Contacts of Structural Units for 4WCI
  • Structure Factors (520 Kb)
  • Retrieve 4WCI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WCI from S2C, [Save to disk]
  • Re-refined 4wci structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WCI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WCI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4wci from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wci_A] [4wci_F] [4wci_D] [4wci_C] [4wci_B] [4wci] [4wci_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WCI: [SH3 ] by SMART
  • Other resources with information on 4WCI
  • Community annotation for 4WCI at PDBWiki (http://pdbwiki.org)

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