4WLP Protein Binding date Oct 07, 2014
title Crystal Structure Of Uch37-Nfrkb Inhibited Deubiquitylating
authors C.W.Hemmis, C.P.Hill, R.Vanderlinden, F.G.Whitby
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase Isozyme L5
Chain: A
Synonym: Uch-L5,Ubiquitin C-Terminal Hydrolase Uch37,Ubiqui Thioesterase L5;
Ec: 3.4.19.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Uchl5, Uch37, Ad-019, Cgi-70
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Factor Related To Kappa-B-Binding Protein
Chain: B
Synonym: Dna-Binding Protein R Kappa-B,Ino80 Complex Subuni
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nfrkb, Ino80g
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 2 2
R_factor 0.193 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.488 95.488 131.964 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand
enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • endopeptidase inhibitor acti...


  • B


    Primary referenceStructural Basis for the Activation and Inhibition of the UCH37 Deubiquitylase., VanderLinden RT, Hemmis CW, Schmitt B, Ndoja A, Whitby FG, Robinson H, Cohen RE, Yao T, Hill CP, Mol Cell. 2015 Mar 5;57(5):901-11. doi: 10.1016/j.molcel.2015.01.016. Epub 2015, Feb 19. PMID:25702872
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (4wlp.pdb1.gz) 145 Kb
  • Biological Unit Coordinates (4wlp.pdb2.gz) 288 Kb
  • CSU: Contacts of Structural Units for 4WLP
  • Structure Factors (600 Kb)
  • Retrieve 4WLP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WLP from S2C, [Save to disk]
  • Re-refined 4wlp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WLP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WLP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4WLP, from MSDmotif at EBI
  • Fold representative 4wlp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wlp_A] [4wlp_B] [4wlp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4WLP
  • Community annotation for 4WLP at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science