4WN5 Transcription date Oct 10, 2014
title Crystal Structure Of The C-Terminal Per-Arnt-Sim (Pasb) Of H 3alpha9 Bound To 18:1-1-Monoacylglycerol
authors A.M.Fala, J.F.Oliveira, S.M.Dias, A.L.Ambrosio
compound source
Molecule: Hypoxia-Inducible Factor 3-Alpha
Chain: A, B
Fragment: Unp Residues 235-345
Synonym: Hif3-Alpha,Basic-Helix-Loop-Helix-Pas Protein Mop7 Basic Helix-Loop-Helix Protein 17,Bhlhe17,Hif3-Alpha-1,Inhi Domain Protein,Ipas,Member Of Pas Protein 7,Pas Domain-Cont Protein 7;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hif3a, Bhlhe17, Mop7, Pasd7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta-2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 2 21
R_factor 0.122 R_Free 0.141
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.650 53.890 67.790 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.15 Å
ligand MVC, P6G, SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (4wn5.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (4wn5.pdb2.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 4WN5
  • CSU: Contacts of Structural Units for 4WN5
  • Structure Factors (3734 Kb)
  • Retrieve 4WN5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WN5 from S2C, [Save to disk]
  • Re-refined 4wn5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WN5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WN5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4wn5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wn5_A] [4wn5_B] [4wn5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4WN5: [PAC] [PAS ] by SMART
  • Other resources with information on 4WN5
  • Community annotation for 4WN5 at PDBWiki (http://pdbwiki.org)

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