4Y18 Antitumor Protein date Feb 06, 2015
title Structure Of Brca1 Brct Domains In Complex With Abraxas Doub Phosphorylated Peptide
authors Q.Wu, T.L.Blundell
compound source
Molecule: Breast Cancer Type 1 Susceptibility Protein
Chain: A, B, C, D, E, F, G, H
Fragment: Brct Domains, Unp Residues 1646-1859
Synonym: Ring Finger Protein 53
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brca1, Rnf53
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Brca1-A Complex Subunit Abraxas
Chain: I, J, K, L, M, N, O, P
Fragment: Unp Residues 399-409
Synonym: Coiled-Coil Domain-Containing Protein 98,Protein F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.233 R_Free 0.298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.819 183.726 190.510 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand SEP enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceStructure of BRCA1-BRCT/Abraxas Complex Reveals Phosphorylation-Dependent BRCT Dimerization at DNA Damage Sites., Wu Q, Paul A, Su D, Mehmood S, Foo TK, Ochi T, Bunting EL, Xia B, Robinson CV, Wang B, Blundell TL, Mol Cell. 2016 Jan 13. pii: S1097-2765(15)00973-9. doi:, 10.1016/j.molcel.2015.12.017. PMID:26778126
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (292 Kb) [Save to disk]
  • Biological Unit Coordinates (4y18.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (4y18.pdb2.gz) 76 Kb
  • Biological Unit Coordinates (4y18.pdb3.gz) 39 Kb
  • Biological Unit Coordinates (4y18.pdb4.gz) 40 Kb
  • Biological Unit Coordinates (4y18.pdb5.gz) 76 Kb
  • Biological Unit Coordinates (4y18.pdb6.gz) 40 Kb
  • Biological Unit Coordinates (4y18.pdb7.gz) 74 Kb
  • Biological Unit Coordinates (4y18.pdb8.gz) 40 Kb
  • Biological Unit Coordinates (4y18.pdb9.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 4Y18
  • CSU: Contacts of Structural Units for 4Y18
  • Structure Factors (672 Kb)
  • Retrieve 4Y18 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y18 from S2C, [Save to disk]
  • Re-refined 4y18 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Y18 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Y18
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4y18 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y18_D] [4y18_M] [4y18_G] [4y18_I] [4y18_C] [4y18_N] [4y18_O] [4y18_F] [4y18] [4y18_P] [4y18_E] [4y18_A] [4y18_L] [4y18_K] [4y18_B] [4y18_H] [4y18_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Y18: [BRCT ] by SMART
  • Other resources with information on 4Y18
  • Community annotation for 4Y18 at PDBWiki (http://pdbwiki.org)

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