4Y2H Transferase date Feb 09, 2015
title Crystal Structure Of Human Protein Arginine Methyltransferas Bound To Sah And An Aryl Pyrazole Inhibitor
authors K.K.Swinger, P.A.Boriack-Sjodin
compound source
Molecule: Protein Arginine N-Methyltransferase 6
Chain: A, B
Fragment: Unp Residues 27-375
Synonym: Heterogeneous Nuclear Ribonucleoprotein Methyltran Like Protein 6,Histone-Arginine N-Methyltransferase Prmt6;
Ec: 2.1.1.-,2.1.1.125
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prmt6, Hrmt1l6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43
R_factor 0.182 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.970 99.970 89.490 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.37 Å
ligand 49K, GOL, SAH enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • histone methyltransferase ac...


  • Primary referenceAryl Pyrazoles as Potent Inhibitors of Arginine Methyltransferases: Identification of the First PRMT6 Tool Compound., Mitchell LH, Drew AE, Ribich SA, Rioux N, Swinger KK, Jacques SL, Lingaraj T, Boriack-Sjodin PA, Waters NJ, Wigle TJ, Moradei O, Jin L, Riera T, Porter-Scott M, Moyer MP, Smith JJ, Chesworth R, Copeland RA, ACS Med Chem Lett. 2015 Apr 6;6(6):655-9. doi: 10.1021/acsmedchemlett.5b00071., eCollection 2015 Jun 11. PMID:26101569
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (4y2h.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 4Y2H
  • CSU: Contacts of Structural Units for 4Y2H
  • Structure Factors (659 Kb)
  • Retrieve 4Y2H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y2H from S2C, [Save to disk]
  • Re-refined 4y2h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Y2H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Y2H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4Y2H, from MSDmotif at EBI
  • Fold representative 4y2h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y2h_A] [4y2h_B] [4y2h]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4Y2H
  • Community annotation for 4Y2H at PDBWiki (http://pdbwiki.org)

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