4Y97 Transferase date Feb 17, 2015
title Crystal Structure Of Human Pol Alpha B-Subunit In Complex Wi Terminal Domain Of Catalytic Subunit
authors Y.Suwa, J.Gu, A.G.Baranovskiy, N.D.Babayeva, T.H.Tahirov
compound source
Molecule: Dna Polymerase Alpha Subunit B
Chain: A, C, E, G
Synonym: Dna Polymerase Alpha 70 Kda Subunit
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pola2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta-2

Molecule: Dna Polymerase Alpha Catalytic Subunit
Chain: B, D, F, H
Fragment: Unp Residues 1265-1444
Synonym: Dna Polymerase Alpha Catalytic Subunit P180
Ec: 2.7.7.7
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pola1, Pola
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta-2
symmetry Space Group: P 1 21 1
R_factor 0.218 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.593 137.135 132.092 90.00 100.97 90.00
method X-Ray Diffractionresolution 2.51 Å
ligand ZN enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G


F, B, H, D


Primary referenceCrystal Structure of the Human Pol alpha B Subunit in Complex with the C-terminal Domain of the Catalytic Subunit., Suwa Y, Gu J, Baranovskiy AG, Babayeva ND, Pavlov YI, Tahirov TH, J Biol Chem. 2015 Apr 6. pii: jbc.M115.649954. PMID:25847248
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (410 Kb) [Save to disk]
  • Biological Unit Coordinates (4y97.pdb1.gz) 105 Kb
  • Biological Unit Coordinates (4y97.pdb2.gz) 106 Kb
  • Biological Unit Coordinates (4y97.pdb3.gz) 105 Kb
  • Biological Unit Coordinates (4y97.pdb4.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 4Y97
  • CSU: Contacts of Structural Units for 4Y97
  • Structure Factors (1376 Kb)
  • Retrieve 4Y97 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y97 from S2C, [Save to disk]
  • Re-refined 4y97 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Y97 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Y97
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4Y97, from MSDmotif at EBI
  • Fold representative 4y97 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y97_B] [4y97_C] [4y97_G] [4y97_E] [4y97_F] [4y97] [4y97_A] [4y97_H] [4y97_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4Y97
  • Community annotation for 4Y97 at PDBWiki (http://pdbwiki.org)

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