4YEE beta2 carbohydrate binding module (CBM) of AMP-activated protein kinase (AMPK) in complex with glucosyl-beta-cyclodextrin date
authors Mobbs, J., Gorman, M.A., Parker, M.W., Gooley, P.R., Griffin, M.
compound source
symmetry
R_factor
R_Free 0.22463
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand GLC, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G


Primary referenceDeterminants of oligosaccharide specificity of the carbohydrate binding modules of AMP-activated protein kinase., Mobbs JI, Koay A, Di Paolo A, Bieri M, Petrie EJ, Gorman MA, Doughty L, Parker MW, Stapleton D, Griffin MD, Gooley PR, Biochem J. 2015 Mar 16. PMID:25774984
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (585 Kb) [Save to disk]
  • Biological Unit Coordinates (4yee.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (4yee.pdb2.gz) 36 Kb
  • Biological Unit Coordinates (4yee.pdb3.gz) 36 Kb
  • Biological Unit Coordinates (4yee.pdb4.gz) 35 Kb
  • Biological Unit Coordinates (4yee.pdb5.gz) 37 Kb
  • Biological Unit Coordinates (4yee.pdb6.gz) 37 Kb
  • Biological Unit Coordinates (4yee.pdb7.gz) 36 Kb
  • Biological Unit Coordinates (4yee.pdb8.gz) 37 Kb
  • Biological Unit Coordinates (4yee.pdb9.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4YEE
  • CSU: Contacts of Structural Units for 4YEE
  • Structure Factors (6988 Kb)
  • Retrieve 4YEE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YEE from S2C, [Save to disk]
  • Re-refined 4yee structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YEE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YEE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4YEE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yee_P] [4yee_A] [4yee_C] [4yee_I] [4yee_G] [4yee] [4yee_O] [4yee_E] [4yee_H] [4yee_D] [4yee_N] [4yee_F] [4yee_M] [4yee_K] [4yee_J] [4yee_B] [4yee_L] [4yee_R] [4yee_Q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4YEE
  • Community annotation for 4YEE at PDBWiki (http://pdbwiki.org)

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