4YII Ligase Cell Cycle date Mar 02, 2015
title Structure Of An Apc2-Ubch10 Complex Reveals Distinctive Cull Ligase Mechanism For Anaphase-Promoting Complexcyclosome
authors N.G.Brown, S.E.Cho, B.A.Schulman
compound source
Molecule: Ubiquitin-Conjugating Enzyme E2 C
Chain: U
Fragment: Unp Residues 27-179
Synonym: Ubch10,Ubiquitin Carrier Protein C,Ubiquitin-Prote C;
Ec: 6.3.2.19
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ube2c, Ubch10
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Anaphase-Promoting Complex Subunit 2
Chain: A
Fragment: Unp Residues 735-822
Synonym: Apc2,Cyclosome Subunit 2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anapc2, Apc2, Kiaa1406
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.196 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
133.113 33.188 51.963 90.00 100.12 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand
enzyme Ligase E.C.6.3.2.19 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (4yii.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 4YII
  • Structure Factors (297 Kb)
  • Retrieve 4YII in mmCIF format [Save to disk]
  • Re-refined 4yii structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YII in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4YII
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4YII, from MSDmotif at EBI
  • Fold representative 4yii from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yii] [4yii_A] [4yii_U]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4YII: [APC2] [UBCc ] by SMART
  • Other resources with information on 4YII
  • Community annotation for 4YII at PDBWiki (http://pdbwiki.org)

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