4YOY		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	MG	enzyme
Gene Ontology	Chain Function Process Component A, E, C exonuclease activity
Primary reference	Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I., Miyazono KI, Ishino S, Tsutsumi K, Ito T, Ishino Y, Tanokura M, Nucleic Acids Res. 2015 Jul 2. pii: gkv654. PMID:26138487

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk] Biological Unit Coordinates (4yoy.pdb1.gz) 236 Kb LPC: Ligand-Protein Contacts for 4YOY CSU: Contacts of Structural Units for 4YOY Structure Factors (1069 Kb) Retrieve 4YOY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4YOY from S2C, [Save to disk] Re-refined 4yoy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4YOY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4yoy] [4yoy_A] [4yoy_B] [4yoy_C] [4yoy_D] [4yoy_E] [4yoy_F] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---