4Z36 Transport Protein Inhibitor date Mar 30, 2015
title Crystal Structure Of Human Lysophosphatidic Acid Receptor 1 With Ono-3080573
authors J.E.Chrencik, C.B.Roth, M.Terakado, H.Kurata, R.Omi, Y.Kihara, D.Warshaviak, S.Nakade, G.Asmar-Rovira, M.Mileni, H.Mizuno, M.T. C.Rodgers, G.W.Han, J.Velasquez, J.Chun, R.C.Stevens, M.A.Hanson Network (Gpcr)
compound source
Molecule: Lysophosphatidic Acid Receptor 1,Soluble Cytochro
Chain: A
Fragment: Unp Residues 2-232; Unp Residues 23-64; Unp Resid 127; Unp Residues 249-327;
Synonym: Lpa-1,Lysophosphatidic Acid Receptor Edg-2,Cytochr Cytochrome B-562,Lpa-1,Lysophosphatidic Acid Receptor Edg-2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Escherichia Coli
Organism_common: Human
Organism_taxid: 9606, 562
Gene: Lpar1, Edg2, Lpa1, Cybc
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_atcc_number: Crl-1711
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 21 21 21
R_factor 0.272 R_Free 0.292
length a length b length c angle alpha angle beta angle gamma
34.350 111.930 153.960 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand 1WV, ON3 enzyme

Primary referenceCrystal Structure of Antagonist Bound Human Lysophosphatidic Acid Receptor 1., Chrencik JE, Roth CB, Terakado M, Kurata H, Omi R, Kihara Y, Warshaviak D, Nakade S, Asmar-Rovira G, Mileni M, Mizuno H, Griffith MT, Rodgers C, Han GW, Velasquez J, Chun J, Stevens RC, Hanson MA, Cell. 2015 Jun 18;161(7):1633-43. doi: 10.1016/j.cell.2015.06.002. PMID:26091040
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (4z36.pdb1.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 4Z36
  • CSU: Contacts of Structural Units for 4Z36
  • Structure Factors (305 Kb)
  • Retrieve 4Z36 in mmCIF format [Save to disk]
  • Re-refined 4z36 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Z36 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Z36
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4Z36, from MSDmotif at EBI
  • Fold representative 4z36 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z36_A] [4z36]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4Z36
  • Community annotation for 4Z36 at PDBWiki (http://pdbwiki.org)

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