4Z4M Crystal structure of GFP-TAX1BP1 UBZ2 domain fusion protein date
authors Rohaim, A., Kawasaki, M., Wakatsuki, S.
compound source
symmetry
R_factor
R_Free 0.29818
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand CR2, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1., Suzuki N, Rohaim A, Kato R, Dikic I, Wakatsuki S, Kawasaki M, FEBS J. 2016 Apr 8. doi: 10.1111/febs.13734. PMID:27062441
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (4z4m.pdb1.gz) 170 Kb
  • LPC: Ligand-Protein Contacts for 4Z4M
  • CSU: Contacts of Structural Units for 4Z4M
  • Structure Factors (459 Kb)
  • Retrieve 4Z4M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z4M from S2C, [Save to disk]
  • Re-refined 4z4m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Z4M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Z4M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z4m] [4z4m_A] [4z4m_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4Z4M
  • Community annotation for 4Z4M at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science