OCA Atlas for 4Z5T

4Z5T

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
D, H
E, A
F, B
G, C

Primary reference

Histone H3.5 forms an unstable nucleosome and accumulates around transcription start sites in human testis., Urahama T, Harada A, Maehara K, Horikoshi N, Sato K, Sato Y, Shiraishi K, Sugino N, Osakabe A, Tachiwana H, Kagawa W, Kimura H, Ohkawa Y, Kurumizaka H, Epigenetics Chromatin. 2016 Jan 15;9:2. doi: 10.1186/s13072-016-0051-y., eCollection 2016. PMID:26779285

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]

Biological Unit Coordinates (4z5t.pdb1.gz) 237 Kb

CSU: Contacts of Structural Units for 4Z5T

Structure Factors (770 Kb)

Retrieve 4Z5T in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4Z5T from S2C, [Save to disk]

Re-refined 4z5t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4Z5T in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4z5t] [4z5t_A] [4z5t_B] [4z5t_C] [4z5t_D] [4z5t_E] [4z5t_F] [4z5t_G] [4z5t_H] [4z5t_I] [4z5t_J]

SWISS-PROT database:

Domains found in 4Z5T: [H2A] [H2B] [H3] [H4 ] by SMART

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