4ZBF Mcl-1 complexed with small molecules date
authors Zhao, B.
compound source
symmetry
R_factor
R_Free 0.2316
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand 4M7 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceDiscovery of Tricyclic Indoles That Potently Inhibit Mcl-1 Using Fragment-Based Methods and Structure-Based Design., Burke JP, Bian Z, Shaw S, Zhao B, Goodwin CM, Belmar J, Browning CF, Vigil D, Friberg A, Camper DV, Rossanese OW, Lee T, Olejniczak ET, Fesik SW, J Med Chem. 2015 Apr 17. PMID:25844895
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (628 Kb) [Save to disk]
  • Biological Unit Coordinates (4zbf.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (4zbf.pdb2.gz) 55 Kb
  • Biological Unit Coordinates (4zbf.pdb3.gz) 54 Kb
  • Biological Unit Coordinates (4zbf.pdb4.gz) 54 Kb
  • Biological Unit Coordinates (4zbf.pdb5.gz) 54 Kb
  • Biological Unit Coordinates (4zbf.pdb6.gz) 54 Kb
  • Biological Unit Coordinates (4zbf.pdb7.gz) 54 Kb
  • Biological Unit Coordinates (4zbf.pdb8.gz) 55 Kb
  • Biological Unit Coordinates (4zbf.pdb9.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 4ZBF
  • CSU: Contacts of Structural Units for 4ZBF
  • Structure Factors (843 Kb)
  • Retrieve 4ZBF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZBF from S2C, [Save to disk]
  • Re-refined 4zbf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ZBF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ZBF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ZBF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zbf_A] [4zbf_G] [4zbf_F] [4zbf_K] [4zbf_D] [4zbf] [4zbf_L] [4zbf_J] [4zbf_B] [4zbf_I] [4zbf_C] [4zbf_E] [4zbf_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ZBF: [BCL ] by SMART
    • Other resources with information on 4ZBF
  • Community annotation for 4ZBF at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science