4ZCH Single-chain human APRIL-BAFF-BAFF Heterotrimer date
authors Lammens, A., Jiang, X., Maskos, K., Schneider, P.
compound source
symmetry
R_factor
R_Free 0.2341
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.43
ligand 144 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStoichiometry of heteromeric BAFF and APRIL cytokines dictate their receptor-binding and signalling properties., Schuepbach-Mallepell S, Das D, Willen L, Vigolo M, Tardivel A, Lebon L, Kowalczyk-Quintas C, Nys J, Smulski C, Zheng TS, Maskos K, Lammens A, Jiang X, Hess H, Tan SL, Schneider P, J Biol Chem. 2015 May 7. pii: jbc.M115.661405. PMID:25953898
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (289 Kb) [Save to disk]
  • Biological Unit Coordinates (4zch.pdb1.gz) 143 Kb
  • Biological Unit Coordinates (4zch.pdb2.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 4ZCH
  • CSU: Contacts of Structural Units for 4ZCH
  • Structure Factors (873 Kb)
  • Retrieve 4ZCH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZCH from S2C, [Save to disk]
  • Re-refined 4zch structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZCH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZCH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ZCH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zch_A] [4zch] [4zch_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ZCH: [TNF ] by SMART
  • Other resources with information on 4ZCH
  • Community annotation for 4ZCH at PDBWiki (http://pdbwiki.org)

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