4ZGZ Protein Binding date Apr 24, 2015
title Structure Of Human Antizyme Inhibitor In Complex With A C-Te Fragment Of Antizyme
authors S.F.Chen, H.Y.Wu, N.L.Chan
compound source
Molecule: Antizyme Inhibitor 1
Chain: A, C
Fragment: Human Ornithine Decarboxylase Antizyme Inhibitor, Residues 2-437;
Synonym: Azi,Ornithine Decarboxylase Antizyme Inhibitor
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Azin1, Oazi, Oazin
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl-21(De3)
Expression_system_vector_type: Pet-28b
Expression_system_plasmid: 28b-Hazin

Molecule: Ornithine Decarboxylase Antizyme 1
Chain: B, D
Fragment: Human Ornithine Decarboxylase Antizyme, Unp Resid 228;
Synonym: Odc-Az
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Oaz1, Oaz
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl-21(De3)
Expression_system_vector_type: Pet-21b
Expression_system_plasmid: 21b-Az110
symmetry Space Group: P 32
R_factor 0.188 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
166.563 166.563 144.864 90.00 90.00 120.00
method X-Ray Diffractionresolution 5.81 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • ornithine decarboxylase acti...


  • D, B


    Primary referenceStructural basis of antizyme-mediated regulation of polyamine homeostasis., Wu HY, Chen SF, Hsieh JY, Chou F, Wang YH, Lin WT, Lee PY, Yu YJ, Lin LY, Lin TS, Lin CL, Liu GY, Tzeng SR, Hung HC, Chan NL, Proc Natl Acad Sci U S A. 2015 Sep 8;112(36):11229-34. doi:, 10.1073/pnas.1508187112. Epub 2015 Aug 24. PMID:26305948
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (334 Kb) [Save to disk]
  • Biological Unit Coordinates (4zgz.pdb1.gz) 161 Kb
  • Biological Unit Coordinates (4zgz.pdb2.gz) 162 Kb
  • CSU: Contacts of Structural Units for 4ZGZ
  • Structure Factors (234 Kb)
  • Retrieve 4ZGZ in mmCIF format [Save to disk]
  • Re-refined 4zgz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZGZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZGZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4zgz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zgz_B] [4zgz_D] [4zgz_C] [4zgz_A] [4zgz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ZGZ
  • Community annotation for 4ZGZ at PDBWiki (http://pdbwiki.org)

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