4ZLP Transcription date May 01, 2015
title Crystal Structure Of Notch3 Negative Regulatory Region
authors X.Xu, S.C.Blacklow
compound source
Molecule: Neurogenic Locus Notch Homolog Protein 3
Chain: A, B
Synonym: Notch 3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Notch3
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s Gnti-
symmetry Space Group: C 1 2 1
R_factor 0.178 R_Free 0.204
length a length b length c angle alpha angle beta angle gamma
122.482 64.310 83.089 90.00 105.23 90.00
method X-Ray Diffractionresolution 2.48 Å
ligand ACT, CA, GOL, MAN, NAG enzyme
A, B

Primary referenceInsights into Autoregulation of Notch3 from Structural and Functional Studies of Its Negative Regulatory Region., Xu X, Choi SH, Hu T, Tiyanont K, Habets R, Groot AJ, Vooijs M, Aster JC, Chopra R, Fryer C, Blacklow SC, Structure. 2015 Jul 7;23(7):1227-35. doi: 10.1016/j.str.2015.05.001. Epub 2015, Jun 4. PMID:26051713
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (4zlp.pdb1.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 4ZLP
  • CSU: Contacts of Structural Units for 4ZLP
  • Structure Factors (230 Kb)
  • Retrieve 4ZLP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZLP from S2C, [Save to disk]
  • Re-refined 4zlp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZLP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZLP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4zlp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zlp_A] [4zlp_B] [4zlp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4ZLP: [NL] [NOD] [NODP ] by SMART
  • Other resources with information on 4ZLP
  • Community annotation for 4ZLP at PDBWiki (http://pdbwiki.org)

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