4ZZX Transferase date Apr 15, 2015
title Structure Of Parp2 Catalytic Domain Bound To An Isoindolinon Inhibitor
authors E.Casale, M.Fasolini, G.Papeo, H.Posteri, D.Borghi, A.A.Busel, F.C M.Ciomei, A.Cirla, E.Corti, M.Danello, M.Fasolini, E.R.Felder, B. A.Galvani, A.Isacchi, A.Khvat, M.Y.Krasavin, R.Lupi, P.Orsini, R. E.Pesenti, D.Pezzetta, S.Rainoldi, F.Riccardisirtori, A.Scolaro F.Zuccotto, D.Donati, A.Montagnoli
compound source
Molecule: Poly [Adp-Ribose] Polymerase 2
Chain: A, B
Fragment: Catalytic Domain, Unp Residues 223-583
Synonym: Parp-2, Hparp-2, Adp-Ribosyltransferase Diphtheria Like 2, Artd2, Nad(+) Adp-Ribosyltransferase 2, Adprt-2, Po Ribose Synthase 2, Padprt-2, Parp-2, Hparp-2, Adp-Ribosyltr Diphtheria Toxin-Like 2, Artd2, Nad(+) Adp-Ribosyltransfera Dprt-2, Polyadp-Ribose Synthase 2, Padprt-2, Poly Adp-Ribos Polymerase 2, Poly Adp-Ribose Polymerase 2;
Ec: 2.4.2.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.213 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.460 72.740 141.340 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand FSU enzyme Transferase E.C.2.4.2.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of 2-[1-(4,4-difluorocyclohexyl)piperidin-4-yl]-6-fluoro-3-oxo-2,3-dihydro-1H-isoind ole-4-carboxamide (NMS-P118): a Potent, Orally Available and Highly Selective PARP-1 Inhibitor for Cancer Therapy., Papeo GM, Posteri H, Borghi D, Busel AA, Caprera F, Casale E, Ciomei M, Cirla A, Corti E, D'Anello M, Fasolini M, Forte B, Galvani A, Isacchi A, Khvat A, Krasavin MY, Lupi R, Orsini P, Perego R, Pesenti E, Pezzetta D, Rainoldi S, Riccardi-Sirtori F, Scolaro A, Sola F, Zuccotto F, Felder ER, Donati D, Montagnoli A, J Med Chem. 2015 Jul 29. PMID:26222319
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (4zzx.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (4zzx.pdb2.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 4ZZX
  • CSU: Contacts of Structural Units for 4ZZX
  • Structure Factors (1287 Kb)
  • Retrieve 4ZZX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZZX from S2C, [Save to disk]
  • Re-refined 4zzx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ZZX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ZZX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4zzx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zzx_A] [4zzx] [4zzx_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ZZX
  • Community annotation for 4ZZX at PDBWiki (http://pdbwiki.org)

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