5A2E Extracellular SRCR domains of human CD6 date
authors Chappell, P.E., Johnson, S., Lea, S.M., Brown, M.H.
compound source
symmetry
R_factor
R_Free 0.2831
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.15
ligand EDO, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of CD6 and Its Ligand CD166 Give Insight into Their Interaction., Chappell PE, Garner LI, Yan J, Metcalfe C, Hatherley D, Johnson S, Robinson CV, Lea SM, Brown MH, Structure. 2015 Jun 22. pii: S0969-2126(15)00222-1. doi:, 10.1016/j.str.2015.05.019. PMID:26146185
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (5a2e.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 5A2E
  • CSU: Contacts of Structural Units for 5A2E
  • Structure Factors (237 Kb)
  • Retrieve 5A2E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A2E from S2C, [Save to disk]
  • Re-refined 5a2e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5A2E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5A2E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a2e_A] [5a2e]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5A2E: [SR ] by SMART
  • Other resources with information on 5A2E
  • Community annotation for 5A2E at PDBWiki (http://pdbwiki.org)

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