5A6C Cell Adhesion date Jun 25, 2015
title Concomitant Binding Of Afadin To Lgn And F-Actin Directs Planar Spindle Orientation
authors M.Carminati, S.Gallini, L.Pirovano, A.Alfieri, S.Bisi, M.Mapelli
compound source
Molecule: G-Protein-Signaling Modulator 2, Afadin
Chain: A, B
Fragment: Lgn Tpr Domain Residues 15-350, Afadin Residues 1
Engineered: Yes
Other_details: Fusion Protein Spanning Residues 15-350 Of H And Residues 1709-1746 Of Afadin
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gpsm2, Lgn, Mllt4, Af6
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6pi
symmetry Space Group: P 21 3
R_factor 0.2059 R_Free 0.2523
length a length b length c angle alpha angle beta angle gamma
169.880 169.880 169.880 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand SO4 enzyme
Primary referenceConcomitant binding of Afadin to LGN and F-actin directs planar spindle orientation., Carminati M, Gallini S, Pirovano L, Alfieri A, Bisi S, Mapelli M, Nat Struct Mol Biol. 2016 Jan 11. doi: 10.1038/nsmb.3152. PMID:26751642
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk]
  • Biological Unit Coordinates (5a6c.pdb1.gz) 125 Kb
  • Biological Unit Coordinates (5a6c.pdb2.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 5A6C
  • CSU: Contacts of Structural Units for 5A6C
  • Structure Factors (660 Kb)
  • Retrieve 5A6C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A6C from S2C, [Save to disk]
  • Re-refined 5a6c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5A6C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5A6C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5a6c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a6c_A] [5a6c] [5a6c_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5A6C: [TPR ] by SMART
  • Other resources with information on 5A6C
  • Community annotation for 5A6C at PDBWiki (http://pdbwiki.org)

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