5AC2 Oxidoreductase date Aug 11, 2015
title Human Aldehyde Dehydrogenase 1a1 With Duocarmycin Analog
authors M.F.Koch, S.Harteis, I.D.Blank, G.Pestel, L.F.Tietze, C.Ochsenfel S.Schneider, S.A.Sieber
compound source
Molecule: Retinal Dehydrogenase 1
Chain: A
Synonym: Raldh 1, Raldh1, Aldh-E1, Alhdii, Aldehyde Dehydro Family 1 Member A1, Aldehyde Dehydrogenase Cytosolic, Alde Dehydrogenase 1a1;
Ec: 1.2.1.36
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 4 2 2
R_factor 0.19927 R_Free 0.25122
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.123 109.123 83.175 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand K9P, TXE, YB enzyme Oxidoreductase E.C.1.2.1.36 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • GTPase activator activity


  • Primary referenceStructural, Biochemical, and Computational Studies Reveal the Mechanism of Selective Aldehyde Dehydrogenase 1A1 Inhibition by Cytotoxic Duocarmycin Analogues., Koch MF, Harteis S, Blank ID, Pestel G, Tietze LF, Ochsenfeld C, Schneider S, Sieber SA, Angew Chem Int Ed Engl. 2015 Sep 16. doi: 10.1002/anie.201505749. PMID:26373694
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (5ac2.pdb1.gz) 652 Kb
  • LPC: Ligand-Protein Contacts for 5AC2
  • CSU: Contacts of Structural Units for 5AC2
  • Structure Factors (653 Kb)
  • Retrieve 5AC2 in mmCIF format [Save to disk]
  • Re-refined 5ac2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Visual 3D analysis of 5AC2
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l5ac2, region C:175-424 [Jmol] [rasmolscript] [script source]
  • Fold representative 5ac2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ac2_A] [5ac2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5AC2
  • Community annotation for 5AC2 at PDBWiki (http://pdbwiki.org)

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