5AEA Cell Adhesion date Aug 27, 2015
title Crystal Structure Of Human Ncam Domain 1
authors M.Kvansakul, K.Griffiths, M.Foley
compound source
Molecule: Neural Cell Adhesion Molecule 1
Chain: A, B
Fragment: Unp Residues 20-116
Synonym: N-Cam-1, Ncam-1, Ncam Domain 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg1
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgc
symmetry Space Group: P 1 21 1
R_factor 0.172 R_Free 0.199
length a length b length c angle alpha angle beta angle gamma
23.850 107.327 41.748 90.00 99.57 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand FLC enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (5aea.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (5aea.pdb2.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 5AEA
  • CSU: Contacts of Structural Units for 5AEA
  • Structure Factors (905 Kb)
  • Retrieve 5AEA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AEA from S2C, [Save to disk]
  • Re-refined 5aea structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AEA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AEA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5aea from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aea] [5aea_B] [5aea_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5AEA: [IGc2 ] by SMART
  • Other resources with information on 5AEA
  • Community annotation for 5AEA at PDBWiki (http://pdbwiki.org)

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