5B8C date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
L, I, F, C


Primary referenceHigh-resolution crystal structure of the therapeutic antibody pembrolizumab bound to the human PD-1., Horita S, Nomura Y, Sato Y, Shimamura T, Iwata S, Nomura N, Sci Rep. 2016 Oct 13;6:35297. doi: 10.1038/srep35297. PMID:27734966
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (454 Kb) [Save to disk]
  • Biological Unit Coordinates (5b8c.pdb1.gz) 114 Kb
  • Biological Unit Coordinates (5b8c.pdb2.gz) 112 Kb
  • Biological Unit Coordinates (5b8c.pdb3.gz) 112 Kb
  • Biological Unit Coordinates (5b8c.pdb4.gz) 114 Kb
  • CSU: Contacts of Structural Units for 5B8C
  • Structure Factors (1452 Kb)
  • Retrieve 5B8C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5B8C from S2C, [Save to disk]
  • Re-refined 5b8c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5B8C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5b8c_G] [5b8c_F] [5b8c_H] [5b8c_I] [5b8c_J] [5b8c_K] [5b8c_L] [5b8c] [5b8c_A] [5b8c_B] [5b8c_C] [5b8c_D] [5b8c_E]
  • SWISS-PROT database:
  • Domain found in 5B8C: [IGv ] by SMART

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