5C50 Protein Binding date Jun 19, 2015
title Crystal Structure Of The Complex Of Human Atg101-Atg13 Horma
authors S.Qi, J.H.Hurley
compound source
Molecule: Autophagy-Related Protein 101
Chain: A
Fragment: Unp Residues 1-198
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atg101, C12orf44, Pp894
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Autophagy-Related Protein 13
Chain: B
Fragment: Unp Residues 12-200
Engineered: Yes
Other_details: Gamgs Is From Vector

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atg13, Kiaa0652
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 1 2 1
R_factor 0.176 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.722 64.447 94.120 90.00 97.54 90.00
method X-Ray Diffractionresolution 1.63 Å
ligand BEN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructure of the Human Atg13-Atg101 HORMA Heterodimer: an Interaction Hub within the ULK1 Complex., Qi S, Kim do J, Stjepanovic G, Hurley JH, Structure. 2015 Oct 6;23(10):1848-57. doi: 10.1016/j.str.2015.07.011. Epub 2015, Aug 20. PMID:26299944
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk]
  • Biological Unit Coordinates (5c50.pdb1.gz) 196 Kb
  • LPC: Ligand-Protein Contacts for 5C50
  • CSU: Contacts of Structural Units for 5C50
  • Structure Factors (764 Kb)
  • Retrieve 5C50 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C50 from S2C, [Save to disk]
  • Re-refined 5c50 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5C50 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5C50
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5c50 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c50_B] [5c50] [5c50_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5C50
  • Community annotation for 5C50 at PDBWiki (http://pdbwiki.org)

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