5C7Z Transport Protein date Jun 25, 2015
title Ap2 Mu2 Adaptin C-Terminal Domain Complexed With Integrin Al Peptide
authors D.J.Owen, P.R.Evans, T.A.Wilson
compound source
Molecule: Ap-2 Complex Subunit Mu
Chain: A
Synonym: Ap-2 Mu Chain,Adaptor Protein Complex Ap-2 Subunit Adaptor-Related Protein Complex 2 Subunit Mu,Clathrin Assem Protein Complex 2 Mu Medium Chain,Clathrin Coat Assembly Pr Ap50,Clathrin Coat-Associated Protein Ap50,Mu2-Adaptin,Plas Membrane Adaptor Ap-2 50 Kda Protein;
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Ap2m1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Integrin Alpha-4
Chain: B
Synonym: Cd49 Antigen-Like Family Member D,Integrin Alpha-I Subunit Alpha;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 64
R_factor 0.174 R_Free 0.224
length a length b length c angle alpha angle beta angle gamma
125.650 125.650 74.410 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.77 Å

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (5c7z.pdb1.gz) 45 Kb
  • CSU: Contacts of Structural Units for 5C7Z
  • Structure Factors (127 Kb)
  • Retrieve 5C7Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C7Z from S2C, [Save to disk]
  • Re-refined 5c7z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5C7Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5C7Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5c7z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c7z_B] [5c7z] [5c7z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5C7Z
  • Community annotation for 5C7Z at PDBWiki (http://pdbwiki.org)

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