OCA Atlas for 5CBE

5CBE

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

EDO

enzyme

Gene
Ontology

Chain	Function	Process	Component
F, E	chemokine activity

Primary reference

A Combination of Structural and Empirical Analyses Delineates the Key Contacts Mediating Stability and Affinity Increases in an Optimized Biotherapeutic Single-chain Fv (scFv)., Tu C, Terraube V, Tam AS, Stochaj W, Fennell BJ, Lin L, Stahl M, LaVallie ER, Somers W, Finlay WJ, Mosyak L, Bard J, Cunningham O, J Biol Chem. 2016 Jan 15;291(3):1267-76. doi: 10.1074/jbc.M115.688010. Epub 2015 , Oct 29. PMID:26515064

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]

Biological Unit Coordinates (5cbe.pdb1.gz) 100 Kb

Biological Unit Coordinates (5cbe.pdb2.gz) 101 Kb

LPC: Ligand-Protein Contacts for 5CBE

CSU: Contacts of Structural Units for 5CBE

Structure Factors (857 Kb)

Retrieve 5CBE in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5CBE from S2C, [Save to disk]

Re-refined 5cbe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CBE in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cbe] [5cbe_A] [5cbe_B] [5cbe_C] [5cbe_D] [5cbe_E] [5cbe_F]

SWISS-PROT database:

Domains found in 5CBE: [IGv] [SCY ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]