5COC Protein Binding date Jul 20, 2015
title Fusion Protein Of Human Calmodulin And B4 Domain Of Protein Staphylococcal Aureus
authors W.H.Jeong, H.Lee, D.H.Song, J.O.Lee
compound source
Molecule: Immunoglobulin G-Binding Protein A,Calmodulin
Chain: A
Fragment: B4 Domain (Unp Residues 213-267),N-Terminal (Unp 5-78);
Synonym: Igg-Binding Protein A,Staphylococcal Protein A,Cam
Engineered: Yes
Mutation: Yes
Other_details: The Fusion Protein Of Residues 213-267 From Immunoglobulin G-Binding Protein A And Residues 5-78 Of Cal
Organism_scientific: Staphylococcus Aureus, Homo Sapiens
Organism_common: Human
Organism_taxid: 1280, 9606
Gene: Spa, Calm1, Calm, Cam, Cam1, Calm2, Cam2, Camb, Calm3 Cam3, Camc, Camiii;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 41
R_factor 0.206 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.807 98.807 31.675 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.67 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (5coc.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 5COC
  • CSU: Contacts of Structural Units for 5COC
  • Structure Factors (80 Kb)
  • Retrieve 5COC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5COC from S2C, [Save to disk]
  • Re-refined 5coc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5COC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5COC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5coc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5coc_A] [5coc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5COC: [EFh ] by SMART
  • Other resources with information on 5COC
  • Community annotation for 5COC at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science