5CYO Hydrolase date Jul 30, 2015
title High Resolution Septin 9 Gtpase Domain In Complex With Gdp
authors S.S.Matos, D.A.Leonardo, H.M.Pereira, E.Horjales, A.P.U.Araujo, R.C.Garratt
compound source
Molecule: Septin-9
Chain: A, B
Synonym: Mll Septin-Like Fusion Protein Msf-A,Mll Septin-Li Protein,Ovarianbreast Septin,Ovbr Septin,Septin D1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sept9, Kiaa0991, Msf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.183 R_Free 0.228
length a length b length c angle alpha angle beta angle gamma
57.497 78.049 77.443 90.00 105.92 90.00
method X-Ray Diffractionresolution 2.04 Å
ligand GDP, MG enzyme
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (5cyo.pdb1.gz) 95 Kb
  • Biological Unit Coordinates (5cyo.pdb2.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 5CYO
  • CSU: Contacts of Structural Units for 5CYO
  • Structure Factors (345 Kb)
  • Retrieve 5CYO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CYO from S2C, [Save to disk]
  • Re-refined 5cyo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CYO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CYO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5cyo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cyo_A] [5cyo_B] [5cyo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5CYO
  • Community annotation for 5CYO at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science